PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022892-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 92aa    MW: 10472.8 Da    PI: 9.3627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022892-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.1e-1019591454
                   HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   d+iN+  ++L++llP+ +   +s K+s a +L+++++YI+sL
  NNU_022892-RA 19 DQINDLVSKLQQLLPEiR-DRRSDKVSAAKVLQETCNYIRSL 59
                   79**************76.99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.611559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-101974IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-71959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-111981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSRQ SGNSRITDDQ INDLVSKLQQ LLPEIRDRRS DKVSAAKVLQ ETCNYIRSLH  60
REVDDLSERL SELLATTDTN SAQAAIIRSL LM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242417.19e-59PREDICTED: transcription factor PRE6-like
SwissprotQ8GW322e-39PRE6_ARATH; Transcription factor PRE6
TrEMBLA0A0B0MSC82e-46A0A0B0MSC8_G
TrEMBLA0A0D2Q2102e-46A0A0D2Q210_G
STRINGGSMUA_Achr2P07410_0011e-45(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-40bHLH family protein